Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs3748242 chr10:81914787 C/T 4.17E-6 484 32.13 31.03 26.07 KM Plot
PRAD rs3750562 chr10:99426415 G/A 8.02E-8 480 31.32 29.4 26.37 KM Plot
PRAD rs3753343 chr1:1160809 T/C 2.58E-10 487 31.27 30.73 13.73 KM Plot
PRAD rs3753575 chr1:184868251 G/A 0.00018 476 32.63 28.22 27.67 KM Plot
PRAD rs3754323 chr1:16346457 T/G 2.36E-5 493 31.63 26.03 67.52 KM Plot
PRAD rs3754324 chr1:16346248 G/C 2.36E-5 493 31.63 26.03 67.52 KM Plot
PRAD rs3754329 chr1:16345255 G/T 2.35E-5 494 31.4 26.03 67.52 KM Plot
PRAD rs3754331 chr1:16345148 C/T 2.37E-5 492 31.87 26.03 67.52 KM Plot
PRAD rs375907845 chr17:79635912 GTT/G 5.99E-5 490 30.78 31.32 25.17 KM Plot
PRAD rs3759801 chr15:82551777 A/G 1.34E-8 494 29.63 33.37 29.08 KM Plot
PRAD rs376406438 chr9:33981300 GAT/G 2.24E-11 487 30.77 31.77 25.18 KM Plot
PRAD rs3766291 chr1:31739048 T/C 2.29E-6 493 22.83 31.27 31.27 KM Plot
PRAD rs3767966 chr1:93997477 C/A 5.59E-6 493 31.27 28.22 33.37 KM Plot
PRAD rs377204383 chr17:62974057 ATT/A 9.25E-9 488 30.8 31.33 19.63 KM Plot
PRAD rs3776984 chr5:154236694 G/A 0 493 29.8 37.43 4.87 KM Plot